Basic Information
Locus ID:
Oco21G010000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 16959234 | 16959821 | + | Oco21G010000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 19,167.50 Da | 40.53 | 84.06 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 53 | 138 | 6.52E-10 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 45 | 159 | 2.8E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 175 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_037421295.1 | LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At4g29180 [Triticum dicoccoides] | 0 |
| Q9LIG2 | Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana OX=3702 GN=At3g21340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C941 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_026741 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0532990 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057047 |
| Poaceae | Oryza coarctata | 1 | Oco21G010000 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g17890.1, LOC_Os09g22300.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G552100 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13861 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g10600, gene.Posoc08g12640 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-21362, nbisL1-mrna-24214, nbisL1-mrna-24215 ... |
| Zosteraceae | Zostera marina | 1 | Zosma02g14880.v3.1 |