Basic Information
Locus ID:
Oco21G009940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 16897605 | 16905380 | + | Oco21G009940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 147,912.48 Da | 66.15 | 55.14 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 846 | 975 | 1.1669E-60 | - |
| CDD | cd00201 | WW | 23 | 51 | 7.04275E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 651 | 821 | 7.5E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 858 | 966 | 8.9E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 53 | 1.56E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 699 | 982 | 1.26E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 837 | 1008 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 836 | 3.7E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 886 | 966 | 8.9E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 646 | 849 | 1.0E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 52 | 2.7E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 11.4672 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 627 | 655 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 658 | 832 | 30.99972 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 861 | 1005 | 25.477005 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 778 | 786 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1168 | 1225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1144 | 1292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1234 | 1252 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_052135909.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X2 [Oryza glaberrima] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | I1R267 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology