Basic Information
Locus ID:
Oco21G009920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EGF domain, unclasssified subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 16876694 | 16880693 | - | Oco21G009920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 80,362.15 Da | 44.20 | 77.96 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 308 | 342 | 3.03653E-5 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 424 | 693 | 2.7E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 406 | 697 | 1.75E-69 | IPR011009 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 266 | 355 | 9.26E-6 | IPR009030 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 260 | 353 | 3.3E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 498 | 716 | 7.0E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 386 | 497 | 5.7E-23 | - |
| SMART | SM00181 | egf_5 | 311 | 354 | 3.6 | IPR000742 |
| SMART | SM00181 | egf_5 | 256 | 307 | 34.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 420 | 701 | 2.2E-22 | IPR000719 |
| SMART | SM00179 | egfca_6 | 308 | 354 | 8.2E-5 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 420 | 695 | 35.283424 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 308 | 337 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 548 | 560 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 426 | 457 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_052166216.1 | wall-associated receptor kinase 1-like [Oryza glaberrima] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3GZK4 | Protein kinase domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2283, BH04.2243, CH03.2334, CH04.2670 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_9AG0692750, gene-QOZ80_9AG0692840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0103900.1 |
| Poaceae | Oryza coarctata | 4 | Oco08G001920, Oco08G001950, Oco18G001800, Oco21G009920 |
| Poaceae | Oryza sativa | 10 | ChrSy.fgenesh.mRNA.14, LOC_Os04g14304.1, LOC_Os11g46860.1 ... |
| Poaceae | Paspalum vaginatum | 17 | gene-BS78_05G102300, gene-BS78_05G242700, gene-BS78_K099700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205048, Pt_Chr0205049, Pt_Chr0205050 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G013790, Chr0G006760, Chr31G008600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G159400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG008000, gene_TRIDC2AG008010 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G071800.1, TraesCS2A02G071900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18470, nbis-gene-18479, nbis-gene-37655 |