Basic Information
Locus ID:
Oco21G009900
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 16855196 | 16865334 | - | Oco21G009900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 137,380.44 Da | 48.20 | 90.44 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 2 | 134 | 4.2386E-10 | IPR038005 |
| Pfam | PF03106 | WRKY DNA -binding domain | 991 | 1051 | 1.6E-21 | IPR003657 |
| Pfam | PF18052 | Rx N-terminal domain | 10 | 89 | 5.7E-8 | IPR041118 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1101 | 1162 | 6.8E-20 | IPR003657 |
| Pfam | PF00931 | NB-ARC domain | 243 | 403 | 8.2E-24 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 480 | 850 | 2.04E-23 | - |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1094 | 1164 | 5.89E-20 | IPR036576 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 177 | 415 | 2.93E-48 | IPR027417 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 988 | 1052 | 2.48E-21 | IPR036576 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 529 | 881 | 1.1E-19 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 4 | 135 | 1.6E-12 | - |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 979 | 1053 | 2.7E-21 | IPR036576 |
| Gene3D | G3DSA:3.40.50.300 | - | 172 | 303 | 8.7E-23 | IPR027417 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1086 | 1165 | 1.2E-20 | IPR036576 |
| Gene3D | G3DSA:1.10.10.10 | - | 401 | 492 | 1.5E-11 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 314 | 400 | 1.5E-11 | IPR042197 |
| SMART | SM00774 | WRKY_cls | 990 | 1052 | 8.4E-34 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 1100 | 1164 | 4.9E-24 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1095 | 1160 | 20.942873 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 985 | 1053 | 19.255695 | IPR003657 |
| PRINTS | PR00364 | Disease resistance protein signature | 349 | 363 | 1.5E-8 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 199 | 214 | 1.5E-8 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 705 | 721 | 1.5E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1165 | 1194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 978 | - | - |
| Coils | Coil | Coil | 926 | 953 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025877420.1 | disease resistance protein RGA5-like isoform X5 [Oryza sativa Japonica Group] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A679BB20 | Putative pi-ta protein OS=Oryza glaberrima OX=4538 GN=Ogla0032O08.2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology