Basic Information
Locus ID:
Oco21G008990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15927790 | 15931993 | + | Oco21G008990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 56,697.03 Da | 42.02 | 104.82 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 11 | 43 | 1.1E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 182 | 203 | 0.16 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 479 | 500 | 0.076 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 320 | 522 | 1.0E-32 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 142 | 321 | 7.06E-27 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 43 | 1.22E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 120 | 319 | 1.1E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 320 | 523 | 3.4E-43 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 48 | 1.3E-6 | - |
| SMART | SM00367 | LRR_CC_2 | 452 | 477 | 0.033 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 260 | 284 | 32.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 206 | 8.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 377 | 402 | 0.065 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 351 | 376 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 429 | 451 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 403 | 428 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 234 | 259 | 84.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 478 | 502 | 5.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 156 | 181 | 0.0025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 325 | 350 | 0.15 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040384873.1 | F-box/LRR-repeat protein 4-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A0P0Y4P9 | Os11g0641200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0641200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |