Basic Information
Locus ID:
Oco21G008590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15516987 | 15522184 | - | Oco21G008590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 47,614.82 Da | 42.40 | 68.46 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 81 | 151 | 3.08687E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 285 | 359 | 1.57867E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 165 | 239 | 7.42197E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 166 | 236 | 6.6E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 147 | 4.0E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 287 | 353 | 1.6E-15 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 78 | 243 | 2.72E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 277 | 365 | 5.51E-25 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 263 | 363 | 2.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 161 | 5.3E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 162 | 262 | 1.3E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 286 | 355 | 3.7E-20 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 286 | 355 | 0.49 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 80 | 149 | 2.4E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 165 | 238 | 9.3E-23 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 165 | 238 | 0.64 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 164 | 242 | 17.591679 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 285 | 359 | 17.489346 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 79 | 153 | 15.869082 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015617424.1 | oligouridylate-binding protein 1B [Oryza sativa Japonica Group] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C514 | Oligouridylate-binding protein 1-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004905 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology