Basic Information
Locus ID:
Oco21G008420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15359160 | 15365989 | - | Oco21G008420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 47,120.17 Da | 51.66 | 89.75 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 159 | 237 | 9.0E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 353 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 100 | 357 | 4.76E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 361 | 4.6E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 355 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 312 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 230 | 8.67045 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 52 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015615180.1 | SEC12-like protein 2 [Oryza sativa Japonica Group] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A0E0MH50 | ANAPC4_WD40 domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology