Basic Information
Locus ID:
Oco21G008410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15357167 | 15359040 | + | Oco21G008410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 45,015.26 Da | 52.62 | 70.49 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 247 | 289 | 3.64096E-18 | - |
| Pfam | PF13639 | Ring finger domain | 246 | 289 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 294 | 1.01E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 297 | 9.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 247 | 288 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 247 | 289 | 12.651561 | IPR001841 |
| PRINTS | PR01217 | Proline rich extensin signature | 2 | 18 | 5.5E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 21 | 38 | 5.5E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 41 | 66 | 5.5E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 53 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015615263.1 | RING-H2 finger protein ATL51 [Oryza sativa Japonica Group] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MH49 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1947, BH04.1964, CH04.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688760, gene-QOZ80_9BG0716390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546750.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066048 |
| Poaceae | Oryza coarctata | 2 | Oco21G008410, Oco22G009640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G207800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015180, Chr31G007630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G126800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG006210, gene_TRIDC6BG008750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G050800.1.cds1, TraesCS6B02G067200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43137, nbis-gene-46115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18186, Zma_g19050 |