Basic Information
Locus ID:
Oco21G008360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15284579 | 15289953 | - | Oco21G008360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 67,967.43 Da | 40.81 | 105.46 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 20 | 60 | 2.6E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 112 | 171 | 1.7E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 282 | 554 | 2.1E-42 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 21 | 198 | 9.78E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 260 | 557 | 1.6E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 360 | 576 | 2.3E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 200 | 1.1E-50 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 250 | 359 | 3.1E-33 | - |
| SMART | SM00220 | serkin_6 | 281 | 556 | 8.9E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 281 | 569 | 35.368229 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 406 | 418 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 287 | 311 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10290.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_006663040.1 | LRR receptor kinase SERK2-like [Oryza brachyantha] | 0 |
| Q6K4T4 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6G1C564 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004948 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1914, BH04.1940, CH04.2286 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688640, gene-QOZ80_9BG0716520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066033 |
| Poaceae | Oryza coarctata | 2 | Oco21G008360, Oco22G009610 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39370.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G204100, gene-BS78_05G204800, gene-BS78_K079100 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107637 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G004840, Chr17G004310, Chr31G007680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G266000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG016000, gene_TRIDC7BG005350 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G134700.2, TraesCS7B02G036100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb167150_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18174 |