Basic Information
Locus ID:
Oco21G008270
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 15226378 | 15230501 | + | Oco21G008270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 36,105.05 Da | 40.35 | 88.17 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 35 | 83 | 6.28132E-15 | - |
| Pfam | PF12906 | RING-variant domain | 35 | 82 | 4.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 87 | 1.94E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 97 | 7.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 34 | 83 | 1.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 27 | 89 | 19.622206 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_052137044.1 | uncharacterized protein LOC127755410 [Oryza glaberrima] | 0 |
| TrEMBL | J3N9I6 | RING-CH-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102716459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology