Basic Information
Locus ID:
Oco21G007040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 13780619 | 13799821 | + | Oco21G007040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 65,483.74 Da | 41.21 | 99.15 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 305 | 578 | 2.1718E-100 | - |
| CDD | cd00118 | LysM | 180 | 222 | 2.01507E-9 | IPR018392 |
| CDD | cd00118 | LysM | 115 | 161 | 6.16442E-10 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 302 | 575 | 2.8E-49 | IPR001245 |
| Pfam | PF01476 | LysM domain | 116 | 162 | 5.0E-8 | IPR018392 |
| Pfam | PF01476 | LysM domain | 180 | 223 | 3.5E-11 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 275 | 576 | 3.37E-83 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 115 | 163 | 1.96E-6 | IPR036779 |
| SUPERFAMILY | SSF54106 | LysM domain | 178 | 223 | 3.27E-8 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 112 | 168 | 1.7E-12 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 169 | 234 | 2.0E-11 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 264 | 374 | 2.1E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 375 | 586 | 1.0E-59 | - |
| SMART | SM00220 | serkin_6 | 299 | 578 | 1.7E-37 | IPR000719 |
| SMART | SM00257 | LysM_2 | 115 | 162 | 3.1E-6 | IPR018392 |
| SMART | SM00257 | LysM_2 | 179 | 223 | 1.2E-7 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 178 | 222 | 13.105681 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 114 | 161 | 12.608113 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 299 | 593 | 39.014801 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 305 | 327 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 420 | 432 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_040384490.1 | cysteine-rich receptor-like protein kinase 6 [Oryza brachyantha] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | J3N8Y0 | Protein kinase domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco21G007030, Oco21G007040 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g34610.1, LOC_Os11g34624.1 |