Basic Information
Locus ID:
Oco21G006420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 12912123 | 12924876 | + | Oco21G006420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 113,981.65 Da | 34.71 | 84.40 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 35 | 312 | 2.93761E-176 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 353 | 445 | 9.3E-23 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 896 | 1002 | 1.2E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 36 | 348 | 1.3E-92 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 600 | 814 | 1.2E-42 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 451 | 3.92E-29 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 24 | 351 | 4.34E-106 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 458 | 1005 | 2.2E-137 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 317 | 395 | 1.8E-32 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 473 | 599 | 3.4E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 451 | 1.5E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 881 | 1009 | 3.6E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 35 | 316 | 1.8E-117 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 600 | 862 | 9.8E-93 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 353 | 427 | 1.8E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_052137292.1 | probable alpha-mannosidase At5g13980 [Oryza glaberrima] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | I1R0K8 | Alpha-mannosidase OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology