Basic Information
Locus ID:
Oco21G006200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 12538242 | 12543451 | - | Oco21G006200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 62,776.14 Da | 48.77 | 98.72 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 4 | 41 | 1.6E-15 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 102 | 6.9E-13 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 17 | 523 | 3.34E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 568 | 2.6E-159 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.2E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 119 | 144 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 360 | 384 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 420 | 443 | 460.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 94 | 118 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 469 | 493 | 200.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_052136327.1 | transport inhibitor response 1-like protein Os11g0515500 [Oryza glaberrima] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3HMA2 | F-box domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology