Basic Information
Locus ID:
Oco21G005790
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 11679655 | 11680893 | - | Oco21G005790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 37,012.62 Da | 47.49 | 73.23 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 48 | 92 | 2.4E-7 | IPR001810 |
| Pfam | PF01753 | MYND finger | 292 | 333 | 9.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 239 | 8.9E-9 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 110 | 238 | 1.96E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 293 | 336 | 6.45E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 46 | 95 | 2.0E-6 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 290 | 338 | 2.8E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 106 | 289 | 1.1E-13 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 291 | 333 | 11.135994 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_015615915.1 | F-box protein At5g50450 [Oryza sativa Japonica Group] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C5N2 | MYND-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012378 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology