Basic Information
Locus ID:
Oco21G005460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 11188298 | 11198235 | + | Oco21G005460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 118,268.27 Da | 47.13 | 77.17 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 735 | 890 | 2.39221E-61 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 507 | 633 | 4.1E-8 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 319 | 889 | 2.3E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 138 | 7.2E-22 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 315 | 891 | 8.44E-108 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 14 | 138 | 1.44E-25 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 308 | 539 | 4.2E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 622 | 898 | 1.7E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 237 | 1.6E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 3 | 150 | 7.7E-35 | - |
| SMART | SM00695 | dusp | 31 | 140 | 1.5E-25 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 137 | 18.795141 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 319 | 892 | 56.425728 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 834 | 851 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 320 | 335 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1027 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_015617536.1 | ubiquitin carboxyl-terminal hydrolase 5 [Oryza sativa Japonica Group] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D9Z6T6 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology