Basic Information
Locus ID:
Oco21G005150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 10242559 | 10252323 | - | Oco21G005150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 98,348.13 Da | 29.37 | 92.71 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 587 | 859 | 1.77487E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 371 | 427 | 6.2E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 186 | 208 | 0.11 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 584 | 854 | 6.1E-51 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 434 | 4.51E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 563 | 856 | 1.69E-79 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 313 | 2.3E-70 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 328 | 446 | 2.2E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 542 | 657 | 1.5E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 658 | 871 | 2.9E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 390 | 413 | 8.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 0.12 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 208 | 14.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 581 | 860 | 5.3E-48 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 414 | 436 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 88 | 110 | 390.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 581 | 860 | 41.276241 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 587 | 608 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 705 | 717 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 471 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24650.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015617631.1 | receptor protein kinase TMK1 [Oryza sativa Japonica Group] | 0 |
| Q2R560 | Receptor protein kinase WSS1 OS=Oryza sativa subsp. japonica OX=39947 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MF69 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1153, CH04.1339 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0351990, gene-QOZ80_9AG0681760 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067050 |
| Poaceae | Oryza coarctata | 2 | Oco21G005150, Oco22G006180 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g41430.1, LOC_Os11g26130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G021660, Chr07G018000, Chr31G004400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G266400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG023700, gene_TRIDC4BG025710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G147700.1, TraesCS4B02G165600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112700_P001, Zm00001eb169350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38701 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18762 |