Basic Information
Locus ID:
Oco21G004410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 7605140 | 7609052 | - | Oco21G004410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 43,545.24 Da | 33.90 | 102.05 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 240 | 361 | 5.67316E-38 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 252 | 352 | 6.9E-21 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 80 | 214 | 9.9E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 98 | 373 | 1.38E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 34 | 231 | 1.0E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 232 | 380 | 1.3E-38 | IPR027417 |
| SMART | SM00487 | ultradead3 | 64 | 243 | 3.0E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 271 | 352 | 2.7E-22 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 239 | 381 | 19.133251 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 228 | 14.621042 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 45 | 73 | 9.881361 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_052160252.1 | eukaryotic initiation factor 4A-III homolog A [Oryza glaberrima] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ECU1 | RNA helicase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology