Basic Information
Locus ID:
Oco21G003820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 4795641 | 4797431 | - | Oco21G003820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 40,496.31 Da | 45.31 | 69.81 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 55 | 2.0E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 129 | 170 | 5.9E-6 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 172 | 218 | 3.0E-11 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 61 | 8.5E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 102 | 365 | 2.88E-44 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 41 | 279 | 8.0E-33 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 280 | 377 | 1.4E-5 | IPR015915 |
| SMART | SM00612 | kelc_smart | 135 | 183 | 2.0E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 184 | 233 | 2.9E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 234 | 283 | 11.0 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_040384985.1 | F-box/kelch-repeat protein At2g44130-like [Oryza brachyantha] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8J5WLU0 | F-box domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0011g28852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology