halophFGD

Basic Information

Locus ID: Oco21G003530

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: PHD-finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG21	4190007	4191912	-	Oco21G003530

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.95	12,326.16 Da	34.05	84.14	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_040384957.1	PHD finger protein At1g33420-like [Oryza brachyantha]	0
TrEMBL	A0A6G1C975	PHD domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034525 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17106, jg39381, jg5094, jg5114
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10339, gene_11906, gene_21026
Amaranthaceae	Atriplex hortensis	3	Ah005533, Ah005563, Ah037349
Amaranthaceae	Beta vulgaris	4	BVRB_2g029070, BVRB_4g077670, BVRB_4g077930, BVRB_9g208740
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17324, Sbi_jg17339, Sbi_jg41716, Sbi_jg48393 ... Sbi_jg61959, Sbi_jg61977
Amaranthaceae	Salicornia europaea	3	Seu_jg27705, Seu_jg582, Seu_jg599
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015483, GOSA_00015496, GOSA_00023272
Amaranthaceae	Suaeda glauca	6	Sgl24336, Sgl24351, Sgl29509, Sgl29522, Sgl79140, Sgl81593
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008347, gene:ENSEOMG00000011790 ... gene:ENSEOMG00000028921, gene:ENSEOMG00000029137, gene:ENSEOMG00000037317, gene:ENSEOMG00000040377
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0006330, CQ.Regalona.r1.4AG0006520 ... CQ.Regalona.r1.4BG0006470, CQ.Regalona.r1.4BG0006640, CQ.Regalona.r1.9AG0007390, CQ.Regalona.r1.9BG0015440
Anacardiaceae	Pistacia vera	4	pistato.v30129370, pistato.v30189110, pistato.v30203010 ... pistato.v30219200
Apiaceae	Apium graveolens	7	Ag1G02102, Ag2G01050, Ag3G00463, Ag3G01627, Ag5G02369 ... Ag8G01906, AgUnG00407
Arecaceae	Cocos nucifera	5	COCNU_01G021260, COCNU_03G009600, COCNU_11G004580 ... COCNU_15G003710, scaffold008086G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103697708, gene-LOC103704801, gene-LOC103716627 ... gene-LOC103717257, gene-LOC103719266, gene-LOC113462577
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1632.V1.1, AsparagusV1_06.1557.V1.1 ... AsparagusV1_09.322.V1.1, AsparagusV1_10.1197.V1.1, AsparagusV1_10.1269.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G32746, Ftri18G09353, Ftri7G19411, Ftri9G06884 ... Ftri9G19262
Brassicaceae	Arabidopsis thaliana	4	AT1G33420.1, AT1G66170.1, AT2G01810.1, AT5G22260.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003728m.g.v1.0, Thhalv10006958m.g.v1.0 ... Thhalv10012892m.g.v1.0, Thhalv10018197m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28880.v2.2, Sp2g13240.v2.2, Sp5g21230.v2.2 ... Sp6g22980.v2.2
Brassicaceae	Brassica nigra	7	BniB02g041360.2N, BniB02g065060.2N, BniB03g035960.2N ... BniB04g009420.2N, BniB04g009430.2N, BniB05g062000.2N, BniB05g062030.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0471, Ceq01G0474, Ceq02G1634, Ceq03G2143, Ceq03G2877 ... Ceq06G2146, Ceq06G2171, Ceq08G0610, Ceq09G0821
Casuarinaceae	Casuarina glauca	7	Cgl01G0502, Cgl02G1694, Cgl03G3026, Cgl06G2260, Cgl06G2286 ... Cgl08G0578, Cgl09G0876
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g10550, gene.Cymno07g09340, gene.Cymno08g04180 ... gene.Cymno09g01450
Dunaliellaceae	Dunaliella salina	1	Dusal.0415s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate05g24720, gene.Thate06g07750, gene.Thate06g09270 ... gene.Thate06g09290
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10228
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2523, evm.TU.LG02.57, evm.TU.LG03.1133
Plantaginaceae	Plantago ovata	6	Pov_00020774, Pov_00021166, Pov_00026880, Pov_00026894 ... Pov_00039055, Pov_00039056
Plumbaginaceae	Limonium bicolor	5	Lb1G01572, Lb1G01576, Lb1G06425, Lb1G06432, Lb5G28245
Poaceae	Echinochloa crus-galli	12	AH01.816, AH02.4062, AH03.2122, AH04.872, BH01.960, BH04.837 ... BH02.4072, BH03.2289, CH01.1002, CH02.4102, CH03.2440, CH04.847
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0041880, gene-QOZ80_1BG0091780 ... gene-QOZ80_3AG0218690, gene-QOZ80_3BG0263990, gene-QOZ80_6AG0536910, gene-QOZ80_6AG0537470, gene-QOZ80_6BG0490240, gene-QOZ80_6BG0490710
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0298130.1, HORVU.MOREX.r3.4HG0337720.1 ... HORVU.MOREX.r3.4HG0344750.1, HORVU.MOREX.r3.5HG0485710.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010220, gene-QYE76_056847, gene-QYE76_062417 ... gene-QYE76_064242
Poaceae	Oryza coarctata	8	Oco01G026370, Oco02G027360, Oco05G021870, Oco06G022630 ... Oco17G006190, Oco18G006370, Oco21G003530, Oco22G004290
Poaceae	Oryza sativa	4	LOC_Os01g65600.1, LOC_Os03g50780.1, LOC_Os09g27620.1 ... LOC_Os11g12650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G103400, gene-BS78_02G199800 ... gene-BS78_03G354900, gene-BS78_05G121300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0104997, Pt_Chr0107623, Pt_Chr0204286, Pt_Chr0501994 ... Pt_Chr0502021, Pt_Chr0600037, Pt_Chr0600435, Pt_Chr0702043
Poaceae	Sporobolus alterniflorus	9	Chr01G006880, Chr02G003190, Chr03G021290, Chr05G030030 ... Chr07G018960, Chr08G020880, Chr10G008710, Chr12G030590, Chr31G003000
Poaceae	Thinopyrum elongatum	6	Tel3E01G616400, Tel4E01G086700, Tel4E01G143000 ... Tel5E01G125400, Tel5E01G378700, Tel7E01G286000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG055420, gene_TRIDC3BG061970 ... gene_TRIDC4AG035860, gene_TRIDC4AG041420, gene_TRIDC4BG014170, gene_TRIDC5AG037010
Poaceae	Triticum aestivum	12	TraesCS3A02G388800.1, TraesCS3B02G419900.1 ... TraesCS3D02G380800.1, TraesCS4A02G225500.1, TraesCS4A02G265200.1, TraesCS4B02G049600.1, TraesCS4B02G090700.1, TraesCS4D02G050000.1, TraesCS4D02G087800.1, TraesCS5A02G233600.1, TraesCS5B02G232100.1, TraesCS5D02G240500.1
Poaceae	Zea mays	4	Zm00001eb167840_P003, Zm00001eb216130_P001 ... Zm00001eb314550_P001, Zm00001eb366330_P001
Poaceae	Zoysia japonica	5	nbis-gene-11205, nbis-gene-15943, nbis-gene-19715 ... nbis-gene-27401, nbis-gene-28574
Poaceae	Zoysia macrostachya	5	Zma_g11657, Zma_g18622, Zma_g2941, Zma_g32642, Zma_g9119
Portulacaceae	Portulaca oleracea	6	evm.TU.LG06.1090, evm.TU.LG06.1314, evm.TU.LG11.428 ... evm.TU.LG11.659, evm.TU.LG18.1903, evm.TU.LG20.19
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g25020, gene.Posoc05g10410, gene.Posoc08g01350
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_15_RagTag.256, evm.TU.Scaffold_15_RagTag.257 ... evm.TU.Scaffold_15_RagTag.267, evm.TU.Scaffold_17_RagTag.718, evm.TU.Scaffold_17_RagTag.745, evm.TU.Scaffold_6_RagTag.1319, evm.TU.Scaffold_6_RagTag.1395
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-16315, nbisL1-mrna-16499, nbisL1-mrna-23410 ... nbisL1-mrna-23438, nbisL1-mrna-26491, nbisL1-mrna-26510
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-3463, nbisL1-mrna-4198, nbisL1-mrna-4834 ... nbisL1-mrna-8294, nbisL1-mrna-8435, nbisL1-mrna-874
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-1159, nbisL1-mrna-1197, nbisL1-mrna-17574 ... nbisL1-mrna-17582, nbisL1-mrna-20031, nbisL1-mrna-20070, nbisL1-mrna-22829
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.160, evm.TU.utg000001l.168 ... evm.TU.utg000011l.859, evm.TU.utg000011l.888, evm.TU.utg000013l.385, evm.TU.utg000013l.403
Rhizophoraceae	Kandelia obovata	4	Maker00004354, Maker00004602, Maker00004674, Maker00007129
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-10778, nbisL1-mrna-10797, nbisL1-mrna-11553 ... nbisL1-mrna-11560, nbisL1-mrna-13412, nbisL1-mrna-13442, nbisL1-mrna-20607, nbisL1-mrna-22431, nbisL1-mrna-23235
Rhizophoraceae	Rhizophora mangle	10	nbisL1-mrna-14302, nbisL1-mrna-14330, nbisL1-mrna-25219 ... nbisL1-mrna-25263, nbisL1-mrna-25361, nbisL1-mrna-2683, nbisL1-mrna-2690, nbisL1-mrna-3876, nbisL1-mrna-3915, nbisL1-mrna-3916
Salicaceae	Populus euphratica	6	populus_peu07237, populus_peu09294, populus_peu16379 ... populus_peu19777, populus_peu21258, populus_peu24822
Solanaceae	Lycium barbarum	4	gene-LOC132612587, gene-LOC132612611, gene-LOC132613673 ... gene-LOC132634293
Solanaceae	Solanum chilense	3	SOLCI001517400, SOLCI002088400, SOLCI004631500
Solanaceae	Solanum pennellii	4	gene-LOC107003584, gene-LOC107014193, gene-LOC107017475 ... gene-LOC107017988
Tamaricaceae	Reaumuria soongarica	3	STRG.15008_chr08_-, gene_18002, gene_5082
Tamaricaceae	Tamarix chinensis	2	TC05G2245, TC06G2609
Zosteraceae	Zostera marina	5	Zosma01g08330.v3.1, Zosma03g08780.v3.1, Zosma03g09230.v3.1 ... Zosma03g31030.v3.1, Zosma04g16330.v3.1