Basic Information
Locus ID:
Oco21G003450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG21 | 3943664 | 3955210 | + | Oco21G003450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 142,141.36 Da | 47.17 | 94.09 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 183 | 403 | 7.5E-33 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 11 | 100 | 3.0E-11 | IPR041118 |
| SUPERFAMILY | SSF52047 | RNI-like | 1125 | 1241 | 8.63E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 166 | 436 | 2.15E-49 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 502 | 898 | 1.36E-24 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 325 | 5.5E-25 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 334 | 421 | 9.0E-9 | IPR042197 |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 124 | 2.6E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1115 | 1246 | 2.6E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 552 | 903 | 1.9E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 422 | 513 | 9.9E-10 | IPR036388 |
| PRINTS | PR00364 | Disease resistance protein signature | 272 | 286 | 5.0E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 199 | 214 | 5.0E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 369 | 383 | 5.0E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 672 | 688 | 5.0E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 951 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 951 | 970 | - | - |
| Coils | Coil | Coil | 126 | 146 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_052136384.1 | disease resistance protein RGA5 [Oryza glaberrima] | 0 |
| Q2R8L1 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0J9Q0 | Protein kinase domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology