Basic Information
Locus ID:
Oco20G010780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
bHLH-MYC and R2R3-MYB transcription factors N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 14651445 | 14654149 | + | Oco20G010780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 74,170.14 Da | 56.51 | 66.95 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 493 | 569 | 1.14203E-45 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 53 | 233 | 4.6E-48 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 500 | 545 | 1.4E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 499 | 569 | 2.88E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 488 | 573 | 1.9E-17 | IPR036638 |
| SMART | SM00353 | finulus | 502 | 551 | 5.6E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 496 | 545 | 17.389959 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 506 | - | - |
| Coils | Coil | Coil | 542 | 569 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_040384318.1 | transcription factor MYC2 [Oryza brachyantha] | 0 |
| Q336P5 | Transcription factor MYC2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MB44 | BHLH domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology