Basic Information
Locus ID:
Oco20G010740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 14607670 | 14608744 | + | Oco20G010740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 23,170.19 Da | 94.62 | 91.73 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 184 | 2.63372E-17 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 190 | 1.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 190 | 1.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015613896.1 | RING-H2 finger protein ATL29 [Oryza sativa Japonica Group] | 0 |
| Q6NKR1 | RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1F1A7 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_10G002660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120104356 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3141 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117830, gene-QOZ80_2BG0171440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0052980.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012836 |
| Poaceae | Oryza coarctata | 1 | Oco20G010740 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005930, Chr13G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G335000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029180, gene_TRIDC1BG034640 |
| Poaceae | Triticum aestivum | 1 | TraesCS1A02G192600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb024440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39258, nbis-gene-8861 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12978 |