Basic Information
Locus ID:
Oco20G009450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 13383416 | 13388056 | + | Oco20G009450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 90,401.93 Da | 47.95 | 83.05 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 15 | 112 | 1.0613E-34 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 735 | 776 | 7.28499E-24 | - |
| CDD | cd14066 | STKc_IRAK | 449 | 709 | 4.94127E-84 | - |
| Pfam | PF00069 | Protein kinase domain | 444 | 658 | 4.4E-41 | IPR000719 |
| Pfam | PF04564 | U-box domain | 732 | 802 | 2.0E-19 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 13 | 77 | 5.44E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 731 | 802 | 3.71E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 421 | 696 | 1.13E-65 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 421 | 515 | 1.6E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 730 | 804 | 5.8E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 516 | 719 | 1.2E-44 | - |
| SMART | SM00504 | Ubox_2 | 734 | 797 | 1.6E-30 | IPR003613 |
| SMART | SM00220 | serkin_6 | 443 | 704 | 1.0E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 443 | 710 | 33.46014 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 730 | 804 | 33.898487 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 561 | 573 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 449 | 470 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 234 | - | - |
| Coils | Coil | Coil | 25 | 45 | - | - |
| Coils | Coil | Coil | 374 | 415 | - | - |
| Coils | Coil | Coil | 318 | 366 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_006662030.1 | U-box domain-containing protein 33-like isoform X1 [Oryza brachyantha] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | J3N4N6 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 GN=102701205 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology