Basic Information
Locus ID:
Oco20G009340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 13293325 | 13294413 | + | Oco20G009340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 23,940.82 Da | 53.82 | 87.90 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 113 | 156 | 6.1E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 164 | 4.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 161 | 3.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 155 | 5.5E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 113 | 156 | 0.0068 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 156 | 13.507235 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 229 | - | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040383971.1 | RING-H2 finger protein ATL5-like [Oryza brachyantha] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0MAD7 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1557.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3349, CH01.3597 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115660, gene-QOZ80_2BG0169500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055590.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012467, gene-QYE76_012508 |
| Poaceae | Oryza coarctata | 3 | Oco03G017450, Oco19G009460, Oco20G009340 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g39936.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G295400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503107 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004280, Chr13G020660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G356100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031240, gene_TRIDC1BG036650 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G207000.1.cds1, TraesCS1B02G220800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb022760_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-36250, nbis-gene-47016, nbis-gene-57345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12852, Zma_g15628 |