Basic Information
Locus ID:
Oco20G008570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 12658068 | 12660928 | - | Oco20G008570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 60,877.13 Da | 34.56 | 101.52 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 111 | 171 | 1.1E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 18 | 57 | 1.9E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 421 | 572 | 2.0E-17 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 17 | 292 | 1.59E-41 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 417 | 572 | 2.95E-31 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 81 | 2.3E-7 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 494 | 573 | 9.6E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 82 | 328 | 8.0E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 380 | 489 | 2.1E-11 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 413 | 573 | 22.845503 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12460.2 | - | 0 |
| RefSeq | XP_006662538.2 | probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Oryza brachyantha] | 0 |
| C0LGE4 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana OX=3702 GN=At1g12460 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MA27 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4870, jg7572 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1896 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003635 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4592, Sbi_jg7476 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12558 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001323 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51836, Sgl57128 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000023062, gene:ENSEOMG00000024560 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0008880, CQ.Regalona.r1.5BG0009220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30143310 |
| Apiaceae | Apium graveolens | 2 | Ag6G01769, Ag9G02415 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G007440, COCNU_10G005670 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700120, gene-LOC103716891, gene-LOC120110832 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2685.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G21892 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G12460.1, AT1G62950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023252m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g11060.v2.2, Sp2g01650.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g027250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0523 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0632 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g03740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1288 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029086 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10182, Lb2G10184 |
| Poaceae | Echinochloa crus-galli | 1 | AH01.5159 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232050, gene-QOZ80_3BG0295890 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0329750.1, HORVU.MOREX.r3.4HG0334260.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071207 |
| Poaceae | Oryza coarctata | 4 | Oco05G001640, Oco06G001620, Oco19G008680, Oco20G008570 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g03570.2, LOC_Os10g38800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G496800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100541, Pt_Chr0100586 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G005610, Chr07G005960, Chr12G001000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G528400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG054030, gene_TRIDC5AG069970 |
| Poaceae | Triticum aestivum | 3 | TraesCS4B02G320600.1, TraesCS4D02G317100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb002030_P001, Zm00001eb403550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3064 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2175 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3478, evm.TU.LG16.108 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g02960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.278, evm.TU.Scaffold_16_RagTag.258 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18104, nbisL1-mrna-22498 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3929, nbisL1-mrna-6010 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20259, nbisL1-mrna-8440 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.206, evm.TU.utg000022l.337 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014214, Maker00018551 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23245, nbisL1-mrna-3478 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10808, nbisL1-mrna-6620 |
| Salicaceae | Populus euphratica | 2 | populus_peu03461, populus_peu34301 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635020 |
| Solanaceae | Solanum chilense | 1 | SOLCI006876800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028420 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14989 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4112 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03310.v3.1 |