Basic Information
Locus ID:
Oco20G008220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 12316449 | 12321798 | - | Oco20G008220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 47,448.71 Da | 48.87 | 74.21 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 2 | 56 | 3.4E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 113 | 205 | 4.6E-11 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 307 | 7.39E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 3 | 204 | 2.34E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 211 | 2.6E-37 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 317 | 1.2E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 34 | 64 | 8.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 151 | 183 | 1.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 2 | 29 | 13.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 108 | 137 | 2.8E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 151 | 177 | 11.46076 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 34 | 55 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 34 | 55 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 151 | 177 | 11.426298 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 108 | 137 | 11.160984 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 300 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 108 | 140 | 11.8347 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 265 | 274 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 418 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006661969.1 | probable E3 ubiquitin-protein ligase XBOS33 [Oryza brachyantha] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | J3N474 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102706131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology