Basic Information
Locus ID:
Oco20G007770
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 11917479 | 11921006 | - | Oco20G007770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 41,232.38 Da | 39.52 | 77.08 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 308 | 356 | 2.5E-10 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 299 | 361 | 2.89E-17 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 45 | 256 | 2.93E-25 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 43 | 265 | 2.8E-10 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 305 | 358 | 5.5E-16 | - |
| SMART | SM00326 | SH3_2 | 304 | 359 | 3.1E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 301 | 360 | 20.06562 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 326 | 342 | 5.4E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 306 | 326 | 5.4E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 342 | 355 | 5.4E-6 | - |
| Coils | Coil | Coil | 242 | 262 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 147 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015612895.1 | SH3 domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | Q337C1 | Os10g0512700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g36870 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology