Basic Information
Locus ID:
Oco20G005870
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 10088294 | 10092647 | + | Oco20G005870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 30,021.05 Da | 42.94 | 83.61 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 126 | 192 | 8.86694E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 51 | 120 | 1.75372E-6 | - |
| Pfam | PF00240 | Ubiquitin family | 9 | 45 | 2.5E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 127 | 195 | 1.4E-9 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 125 | 201 | 1.49E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 53 | 121 | 5.07E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 45 | 1.04E-5 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 8 | 47 | 5.9E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 49 | 120 | 1.5E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 121 | 214 | 1.2E-12 | - |
| SMART | SM00213 | ubq_7 | 124 | 195 | 2.1E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 7 | 65 | 2.0 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 124 | 199 | 12.770482 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 48 | 120 | 8.785583 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052134356.1 | polyubiquitin 12-like [Oryza glaberrima] | 0 |
| P0CG74 | Polyubiquitin OS=Candida albicans OX=5476 GN=UBI4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D9XKJ6 | Polyubiquitin-like OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |