Basic Information
Locus ID:
Oco20G005520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 9675321 | 9681068 | - | Oco20G005520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 60,350.11 Da | 44.78 | 89.85 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 228 | 526 | 2.86087E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 264 | 4.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 490 | 526 | 4.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 484 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 223 | 526 | 1.58E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 218 | 490 | 1.3E-49 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 491 | 538 | 7.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 398 | 438 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 527 | 8.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 484 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 357 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 2.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 494 | 526 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 314 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 494 | 526 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 31 | 63 | 8.540377 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 266 | 9.625601 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015697396.1 | WD repeat-containing protein WDS homolog [Oryza brachyantha] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EYV2 | LisH domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology