Basic Information
Locus ID:
Oco20G004750
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 8752050 | 8756169 | + | Oco20G004750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 32,457.98 Da | 37.27 | 93.02 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 226 | 269 | 1.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 273 | 1.52E-17 | - |
| SUPERFAMILY | SSF158997 | Trm112p-like | 21 | 68 | 1.31E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 281 | 1.0E-16 | IPR013083 |
| Gene3D | G3DSA:2.20.25.10 | - | 26 | 75 | 1.3E-5 | - |
| SMART | SM00184 | ring_2 | 226 | 268 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 269 | 13.300693 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15100.1 | RING-H2 finger A2A. Encodes a putative RING-H2 finger protein RHA2a. | 0 |
| RefSeq | XP_052134537.1 | E3 ubiquitin-protein ligase RHA2A-like [Oryza glaberrima] | 0 |
| Q9ZT50 | E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1 | 0 | |
| TrEMBL | J3N2W2 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37371 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24139 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027241 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12624, Sbi_jg53316 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8607 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010406 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl33638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001555, gene:ENSEOMG00000003205 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0023400, CQ.Regalona.r1.6BG0024780 |
| Apiaceae | Apium graveolens | 1 | Ag3G02088 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002710, COCNU_10G001870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719591, gene-LOC103721142 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12331 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35905.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087740.2N, BniB05g002620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0125 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0136 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g06240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.54, evm.TU.LG02.2807 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1946, AH01.1947, BH01.2290, BH01.2293, CH01.2393 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017055 |
| Poaceae | Oryza coarctata | 2 | Oco19G004860, Oco20G004750 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G225700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013840, Chr13G015310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G254100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG020070, gene_TRIDC1BG025410 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G135800.1, TraesCS1B02G156400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-57141 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16093 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.316, evm.TU.LG24.915, evm.TU.LG25.996 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-208, nbisL1-mrna-209, nbisL1-mrna-78 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5873 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1172 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006810 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616988 |
| Solanaceae | Solanum chilense | 1 | SOLCI002043500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012224 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16269 |