Basic Information
Locus ID:
Oco20G004730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 8748218 | 8749070 | + | Oco20G004730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 14,688.40 Da | 42.57 | 76.43 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015613407.1 | F-box protein At4g35930 isoform X2 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0D3HE22 | DUF4683 domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17230 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16850 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026818 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13763, Sbi_jg52153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9688 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017508 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33293, Sgl38575, Sgl38682 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000543, gene:ENSEOMG00000002845 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019700, CQ.Regalona.r1.6BG0020820 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210660, pistato.v30211270 |
| Apiaceae | Apium graveolens | 1 | Ag3G01506 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002640, COCNU_10G001830 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719598, gene-LOC103721140 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2659.V1.1, AsparagusV1_10.183.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G25813, Ftri1G29579, Ftri6G30246 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025800m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g087760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0142 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10453 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2803 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020387 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06133, Lb1G06141 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1944, BH01.2295, CH01.2395 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0125530, gene-QOZ80_2BG0181200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0038080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018727 |
| Poaceae | Oryza coarctata | 2 | Oco19G004840, Oco20G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G226000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G015320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G253900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG020050, gene_TRIDC1BG025380 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G136000.2, TraesCS1B02G156200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047460_P004, Zm00001eb222730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21330, nbis-gene-48035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13292, Zma_g16091 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.320, evm.TU.LG25.992 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.76, evm.TU.Scaffold_6_RagTag.2133 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16998, nbisL1-mrna-214, nbisL1-mrna-75 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13370, nbisL1-mrna-14334 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11692, nbisL1-mrna-5876 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1306, evm.TU.utg000019l.1169 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006770, Maker00007415 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15679, nbisL1-mrna-6577 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2446, nbisL1-mrna-2981 |
| Salicaceae | Populus euphratica | 1 | populus_peu14100 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618643, gene-LOC132623116 |
| Solanaceae | Solanum chilense | 1 | SOLCI006378500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012485 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3506 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0752 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18210.v3.1 |