Basic Information
Locus ID:
Oco20G003360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 7132090 | 7137582 | - | Oco20G003360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 79,620.12 Da | 42.98 | 82.58 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 430 | 698 | 1.88543E-87 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 426 | 695 | 5.9E-39 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 40 | 79 | 5.8E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 154 | 214 | 8.9E-11 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 252 | 1.79E-33 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 408 | 695 | 4.85E-68 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 192 | 1.5E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 503 | 717 | 1.7E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 390 | 501 | 1.0E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 257 | 6.1E-11 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 104 | 130 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 177 | 200 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 153 | 176 | 6.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 201 | 223 | 73.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 203 | 225 | 7.419328 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 424 | 698 | 34.308178 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 430 | 453 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_006661732.1 | protein STRUBBELIG-RECEPTOR FAMILY 7-like [Oryza brachyantha] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BY31 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology