Basic Information
Locus ID:
Oco20G002000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 3830086 | 3833941 | - | Oco20G002000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 46,472.59 Da | 65.09 | 56.56 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 338 | 378 | 1.04279E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 337 | 383 | 9.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 384 | 1.47E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 388 | 1.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 339 | 377 | 3.5E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 9 | 72 | 860.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 275 | 417 | 4.6E-10 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 339 | 378 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006662254.2 | probable E3 ubiquitin-protein ligase LOG2 [Oryza brachyantha] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0M6C9 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology