Basic Information
Locus ID:
Oco20G001150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 1940881 | 1953953 | - | Oco20G001150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 105,364.73 Da | 43.26 | 82.27 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 753 | 906 | 4.13933E-57 | - |
| Pfam | PF06337 | DUSP domain | 41 | 138 | 8.1E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 313 | 905 | 2.8E-85 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 138 | 4.32E-28 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 908 | 2.75E-110 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 238 | 2.4E-11 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 11 | 150 | 1.5E-33 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 687 | 915 | 4.5E-56 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 298 | 517 | 1.4E-68 | - |
| SMART | SM00695 | dusp | 37 | 140 | 2.0E-21 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 137 | 18.81831 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 908 | 59.115147 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 851 | 868 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_052169712.1 | ubiquitin carboxyl-terminal hydrolase 9-like [Oryza glaberrima] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0EW13 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology