Basic Information
Locus ID:
Oco20G001020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 1575632 | 1579272 | - | Oco20G001020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 122,931.14 Da | 42.96 | 104.48 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 158 | 217 | 1.4E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 229 | 288 | 1.2E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 859 | 1126 | 1.1E-43 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 567 | 588 | 1.7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 712 | 733 | 1.0 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 78 | 2.8E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 84 | 220 | 6.8E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 842 | 1126 | 1.23E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 307 | 632 | 1.81E-60 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 567 | 758 | 4.9E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 180 | 374 | 2.38E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 929 | 1133 | 1.1E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 469 | 1.6E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 109 | 6.1E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 110 | 358 | 7.4E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 785 | 1.1E-85 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 818 | 928 | 1.1E-20 | - |
| SMART | SM00369 | LRR_typ_2 | 395 | 419 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 710 | 734 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 347 | 371 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 637 | 660 | 33.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 857 | 1132 | 1.5E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 443 | 467 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 275 | 299 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 204 | 227 | 53.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 857 | 1133 | 35.608505 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 863 | 885 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 974 | 986 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 183 | 196 | 2.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 710 | 723 | 2.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_040384157.1 | leucine-rich repeat receptor-like protein kinase PEPR2 [Oryza brachyantha] | 0 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F2D9 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_038669 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |