Basic Information
Locus ID:
Oco20G000440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 762089 | 763604 | + | Oco20G000440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 41,727.89 Da | 45.34 | 110.20 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 27 | 100 | 1.8E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 124 | 323 | 1.04E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 102 | 1.87E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 107 | 9.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 153 | 388 | 1.5E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 30 | 97 | 7.2E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 104 | 34.411537 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_040384405.1 | U-box domain-containing protein 21-like [Oryza brachyantha] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EX54 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016423 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology