Basic Information
Locus ID:
Oco20G000170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 384602 | 390275 | - | Oco20G000170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 100,606.23 Da | 43.39 | 74.53 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 162 | 288 | 2.90107E-55 | - |
| CDD | cd18635 | CD_CMT3_like | 428 | 482 | 7.01337E-27 | - |
| Pfam | PF01426 | BAH domain | 168 | 287 | 1.9E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 491 | 852 | 4.6E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 430 | 482 | 3.3E-11 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 326 | 853 | 7.09E-78 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 410 | 490 | 2.1E-14 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 329 | 871 | 3.0E-269 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 108 | 273 | 1.5E-50 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 645 | 819 | 3.0E-269 | - |
| SMART | SM00439 | BAH_4 | 163 | 288 | 2.7E-12 | IPR001025 |
| SMART | SM00298 | chromo_7 | 428 | 485 | 8.5E-10 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 163 | 288 | 17.027946 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 429 | 480 | 14.313201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 327 | 860 | 45.745235 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 497 | 509 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 540 | 554 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 328 | 344 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 586 | 599 | 1.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_040384096.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Oryza brachyantha] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | J3N0I2 | DNA (cytosine-5-)-methyltransferase OS=Oryza brachyantha OX=4533 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology