Basic Information
Locus ID:
Oco20G000060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG20 | 124566 | 127452 | - | Oco20G000060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 89,678.07 Da | 32.90 | 80.09 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 311 | 404 | 6.24408E-13 | - |
| CDD | cd14066 | STKc_IRAK | 509 | 796 | 2.72374E-84 | - |
| Pfam | PF00069 | Protein kinase domain | 507 | 715 | 9.1E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 485 | 795 | 5.47E-72 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 90 | 176 | 4.08E-6 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 473 | 577 | 4.2E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 578 | 805 | 6.5E-53 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 155 | 267 | 3.2E-6 | IPR036426 |
| SMART | SM00220 | serkin_6 | 503 | 794 | 7.7E-28 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 7 | 814 | 7.9E-197 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 503 | 798 | 35.170353 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 309 | 405 | 7.236212 | IPR003609 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 509 | 531 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 633 | 645 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24080.2 | - | 0 |
| RefSeq | XP_052134777.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Oryza glaberrima] | 0 |
| Q9FLV4 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0M4V9 | non-specific serine/threonine protein kinase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21983 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017416, Ah017420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg40241, Sbi_jg50225, Sbi_jg9751, Sbi_jg9752 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1825, Seu_jg18930, Seu_jg18931 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011401, GOSA_00011403 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41583, Sgl41620, Sgl46417, Sgl46466 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044682 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0001070, CQ.Regalona.r1.8AG0001080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218860 |
| Apiaceae | Apium graveolens | 1 | Ag8G01886 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G005500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722865 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1631.V1.1, AsparagusV1_07.2556.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G22868 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0786 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0853 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11122 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.Contig10.16, evm.TU.LG06.1395 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021557 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3067, CH01.3292 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0118740, gene-QOZ80_2AG0118770 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339400.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029879, gene-QYE76_029890 |
| Poaceae | Oryza coarctata | 1 | Oco20G000060 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g01100.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G268700, gene-BS78_05G107500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502905 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G025370, Chr09G006670, Chr13G018130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G100400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039990, gene_TRIDC4BG009190 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G255400.1.cds1, TraesCS4B02G059700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38221, nbis-gene-39372 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13025, Zma_g15792 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1305, evm.TU.LG18.1369, evm.TU.LG18.1370 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.268 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5684 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17583 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.76 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2682 |
| Salicaceae | Populus euphratica | 1 | populus_peu21238 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617218 |
| Solanaceae | Solanum chilense | 1 | SOLCI000977500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014829 |