Basic Information
Locus ID:
Oco19G010540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 15859287 | 15861167 | + | Oco19G010540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 40,103.76 Da | 73.18 | 73.69 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 157 | 200 | 6.51776E-18 | - |
| Pfam | PF13639 | Ring finger domain | 157 | 200 | 5.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 210 | 6.62E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 205 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 199 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 200 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 42 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_040384276.1 | RING-H2 finger protein ATL65-like [Oryza brachyantha] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5WPS5 | RING-type domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0012g21210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2854, BH01.3191, CH01.3427 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117160, gene-QOZ80_2BG0170840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057210.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012769, gene-QYE76_012817 |
| Poaceae | Oryza coarctata | 2 | Oco19G010540, Oco20G010360 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G281100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005420, Chr13G019420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G366200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032510, gene_TRIDC1BG037800 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G215100.1.cds1, TraesCS1B02G228600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024020_P001, Zm00001eb390730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36411, nbis-gene-38050 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12941, Zma_g15712 |