Basic Information
Locus ID:
Oco19G008950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 14361150 | 14370467 | + | Oco19G008950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 25,820.37 Da | 45.50 | 90.26 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 79 | 6.70814E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.2E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 170 | 9.8E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 85 | 2.09E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 5.4E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.1E-39 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.314432 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 13.104751 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.2E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.2E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.2E-30 | IPR002100 |
| Coils | Coil | Coil | 150 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_052133900.1 | MADS-box transcription factor 56 [Oryza glaberrima] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4D6CLJ2 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology