Basic Information
Locus ID:
Oco19G008370
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 13820898 | 13824757 | - | Oco19G008370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 52,566.21 Da | 51.17 | 78.73 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 199 | 224 | 0.0011 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.0097 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 3.6E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 354 | 2.25E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 251 | 1.61E-41 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 148 | 2.3E-33 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 170 | 255 | 4.1E-11 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 365 | 5.7E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 198 | 230 | 0.005 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 8.6 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.920248 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.0399 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 198 | 224 | 10.25881 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 347 | 9.509172 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 198 | 224 | 10.232388 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 312 | 321 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 463 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_052133807.1 | probable E3 ubiquitin-protein ligase XBOS33 [Oryza glaberrima] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0M9V7 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology