Basic Information
Locus ID:
Oco19G006970
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 12521687 | 12528369 | - | Oco19G006970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 95,756.33 Da | 46.06 | 86.92 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 284 | 5.45195E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 8.8E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 129 | 4.8E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 706 | 863 | 2.8E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 7.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 281 | 1.18E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 294 | 2.0E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 5.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 4.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 0.0058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 262 | 290.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 13.738306 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 17.760201 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 15.186998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 11.945589 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.26195 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 15.420926 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 6.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 6.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 6.2E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 866 | 19.539299 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_052169626.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like isoform X1 [Oryza glaberrima] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0E0BC63 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology