Basic Information
Locus ID:
Oco19G005960
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 11531788 | 11534417 | + | Oco19G005960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 27,809.87 Da | 47.65 | 94.56 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 2 | 54 | 5.06576E-12 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 63 | 133 | 7.93074E-8 | - |
| Pfam | PF00240 | Ubiquitin family | 2 | 55 | 7.6E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 140 | 208 | 7.2E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 48 | 135 | 7.37E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 55 | 5.07E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 134 | 207 | 1.68E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 134 | 230 | 1.3E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 60 | 133 | 2.1E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 56 | 7.8E-15 | - |
| SMART | SM00213 | ubq_7 | 137 | 208 | 0.028 | IPR000626 |
| SMART | SM00213 | ubq_7 | 61 | 136 | 1.8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 56 | 0.41 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 55 | 15.797262 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 137 | 212 | 10.309861 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 61 | 133 | 11.006675 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 37 | 58 | 5.0E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 16 | 36 | 5.0E-5 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_052134356.1 | polyubiquitin 12-like [Oryza glaberrima] | 0 |
| P0CG67 | Polyubiquitin-B OS=Gorilla gorilla gorilla OX=9595 GN=UBB PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D9XKJ6 | Polyubiquitin-like OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |