Basic Information
Locus ID:
Oco19G005600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 11099519 | 11104449 | - | Oco19G005600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 59,871.39 Da | 45.43 | 88.34 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 228 | 526 | 1.68446E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 526 | 3.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 264 | 3.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 309 | 8.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 484 | 0.0061 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 223 | 526 | 6.87E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 488 | 2.4E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 535 | 5.1E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 6.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 484 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 438 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 527 | 5.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 357 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 6.1E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 266 | 10.23196 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 494 | 535 | 12.156496 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 31 | 63 | 8.805831 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 494 | 526 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 314 | 11.286501 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015697396.1 | WD repeat-containing protein WDS homolog [Oryza brachyantha] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EYV2 | LisH domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology