Basic Information
Locus ID:
Oco19G004490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 9736699 | 9740277 | + | Oco19G004490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 36,392.92 Da | 38.67 | 86.43 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 22 | 330 | 2.2E-71 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 17 | 332 | 9.81E-78 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 11 | 329 | 5.5E-97 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 287 | 332 | 0.22 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 9 | 210 | 7.3E-6 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 9 | 330 | 45.557709 | IPR003726 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_015613413.1 | homocysteine S-methyltransferase 2 [Oryza sativa Japonica Group] | 0 |
| Q9FUM9 | Homocysteine S-methyltransferase 2 OS=Zea mays OX=4577 GN=HMT-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EYQ3 | Hcy-binding domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_024461 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology