Basic Information
Locus ID:
Oco19G002880
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 7304911 | 7305944 | - | Oco19G002880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 33,474.36 Da | 46.70 | 94.97 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 10 | 49 | 3.5E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 184 | 249 | 1.8E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 52 | 3.14E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 51 | 1.1E-11 | - |
| SMART | SM00256 | fbox_2 | 11 | 52 | 5.6E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 65 | 254 | 2.1E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 9.629941 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015613310.1 | F-box/kelch-repeat protein At3g23880 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A2Z6Y4 | F-box domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_33455 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH01.3850, BH04.2111, CH01.4111, CH01.4112 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ... |
| Poaceae | Oryza sativa | 8 | LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G485500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11989, nbis-gene-47249, nbis-gene-49948 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1101, Zma_g3492, Zma_g3565 |