Basic Information
Locus ID:
Oco19G000670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 1169746 | 1182344 | - | Oco19G000670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 97,971.50 Da | 33.72 | 80.58 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 471 | 683 | 1.7E-51 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 224 | 316 | 1.4E-17 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 765 | 870 | 5.8E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 1 | 219 | 3.6E-55 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 1 | 220 | 1.41E-64 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 324 | 873 | 5.34E-150 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 223 | 318 | 3.27E-26 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 465 | 731 | 1.4E-99 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 342 | 464 | 2.3E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 188 | 266 | 1.9E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 752 | 873 | 5.3E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 187 | 1.9E-68 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 267 | 323 | 5.2E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 224 | 298 | 1.1E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_006661627.2 | alpha-mannosidase-like [Oryza brachyantha] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EXA9 | Alpha-mannosidase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_019891 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology