Basic Information
Locus ID:
Oco19G000130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 246958 | 252524 | - | Oco19G000130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 58,967.68 Da | 33.20 | 82.52 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 52 | 106 | 1.69082E-26 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 53 | 106 | 9.3E-12 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 114 | 476 | 1.0E-33 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 477 | 2.33E-65 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 37 | 114 | 4.3E-16 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 269 | 443 | 1.7E-237 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 2 | 495 | 1.7E-237 | - |
| SMART | SM00298 | chromo_7 | 52 | 109 | 5.6E-9 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 53 | 104 | 13.679701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 9 | 484 | 36.97673 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 121 | 133 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 164 | 178 | 1.3E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 210 | 223 | 1.3E-5 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_015613201.1 | DNA (cytosine-5)-methyltransferase CMT3 [Oryza sativa Japonica Group] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | B8A9C3 | Cytosine-specific methyltransferase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_02246 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology