Basic Information
Locus ID:
Oco19G000100
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NLE (NUC135) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG19 | 216842 | 224584 | - | Oco19G000100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 56,062.28 Da | 36.66 | 81.23 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 105 | 433 | 5.46275E-80 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 398 | 433 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 349 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 190 | 231 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 236 | 271 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 393 | 1.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 183 | 2.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 104 | 141 | 2.8E-8 | IPR001680 |
| Pfam | PF08154 | NLE (NUC135) domain | 16 | 76 | 1.2E-11 | IPR012972 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 101 | 433 | 2.93E-78 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 469 | 2.4E-109 | IPR015943 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 1.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 231 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 393 | 3.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 435 | 5.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 141 | 5.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 350 | 0.0033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 194 | 234 | 9.361965 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 433 | 9.256512 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 240 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 277 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 402 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 188 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 361 | 393 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 109 | 150 | 17.994127 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 433 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 281 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 109 | 144 | 14.107395 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 259 | 273 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 128 | 142 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 128 | 142 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 380 | 394 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 218 | 232 | 4.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52820.1 | WD-40 repeat family protein / notchless protein, putative. | 0 |
| RefSeq | XP_006661596.2 | notchless protein homolog [Oryza brachyantha] | 0 |
| Q9FLX9 | Notchless protein homolog OS=Arabidopsis thaliana OX=3702 GN=NLE1 PE=2 SV=1 | 0 | |
| TrEMBL | Q33BI6 | Notchless, putative, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g01540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17112 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16410, gene_8297 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035696 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g071860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19609, Sbi_jg21740 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16003 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008624 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl63023, Sgl63026, Sgl67650, Sgl67651 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016732, gene:ENSEOMG00000020069 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017160, CQ.Regalona.r1.7BG0026070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30230010 |
| Apiaceae | Apium graveolens | 1 | Ag7G01108 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705641 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2041.V1.1, AsparagusV1_05.975.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G24042 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52820.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013442m.g.v1.0, Thhalv10025051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g14980.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g030590.2N, BniB02g054270.2N, BniB05g032410.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0778, Ceq05G0786 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0786, Cgl05G0790 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g03720 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0107s00002.v1.0, Dusal.1474s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g24660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.84 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024641, Pov_00028634 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06796, Lb3G19306 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1230, CH01.2726, CH05.1477 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0570470, gene-QOZ80_7BG0602240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0095090.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G000100, Oco20G000140 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g01540.1, LOC_Os11g38170.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G260600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505934 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005160, Chr24G009180, Chr27G012100, Chr28G008590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G580900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG065070, gene_TRIDC1BG074310 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G443600.1, TraesCS1B02G478100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297740_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-806 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6582 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1108 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g18210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.612 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6111 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10228 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.428 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013862 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10242 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7251 |
| Salicaceae | Populus euphratica | 2 | populus_peu01891, populus_peu35922 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610031 |
| Solanaceae | Solanum chilense | 1 | SOLCI007105700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012332 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13740_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3919 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24200.v3.1 |