Basic Information
Locus ID:
Oco18G012240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 16010807 | 16014949 | + | Oco18G012240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 77,502.84 Da | 63.50 | 66.75 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 625 | 665 | 1.40742E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 623 | 670 | 2.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 625 | 671 | 4.82E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 606 | 677 | 5.5E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 626 | 665 | 10.92546 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 279 | - | - |
| Coils | Coil | Coil | 555 | 575 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025875929.1 | uncharacterized protein LOC4347915 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1DGG0 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011144 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology